![]() ![]() A number of these efforts have been incorporated into subsequent phases of ENCODE data production and analysis. In recognition of the need for new approaches, methods and technologies to achieve the goals of ENCODE, NHGRI has also funded four rounds of technology development initiatives since 2003. melanogaster genomes under the modENCODE Project. A parallel effort was devoted to whole-genome analyses of the C. The ENCODE Project started in 2003 with the ENCODE Pilot Project, which focused on 1% of the human genome and subsequently completed two additional phases (ENCODE 2 and ENCODE 3) which conducted whole-genome analyses on the human and mouse genomes. Additional information about data standards and guidelines and uniform data processing can also be found on the ENCODE Portal. (See ENCODE-funded Publications and Community Publications.) The ENCODE Portal also hosts data from modENCODE as well as data from the RoadMap Epigenomics and Genomics of Gene Regulation projects. Lists of publications using ENCODE resources can be found on the ENCODE Portal. The ENCODE " Encyclopedia" organizes these data into two levels of annotations: 1) integrative-level annotations, including a registry of candidate cis-regulatory elements and 2) ground-level annotations derived directly from experimental data.Īs a result of outreach and collaboration, ENCODE data are widely used. ENCODE has produced vast amounts of data that can be accessed through the project's freely accessible database, the ENCODE Portal.
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